Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0755526.2a.1c with 9 members (cerebellin)

Chordata / Vertebrata / Gnathostomata / Euteleostomi / Neopterygii / Teleostei / Clupeocephala /

... /

Euteleosteomorpha / Acanthomorphata / Percomorphaceae / Ovalentaria /

Atherinomorphae /

Completeness score: 0.90

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This HOG has 40 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0755526.2a	762	148	cerebellin
2	HOG:E0755526.2a.1c	224	42	cerebellin
3	HOG:E0755526.2a.4b	45	5	cerebellin
4	HOG:E0755526.2a.1a.3b	18	2	cerebellin
5	HOG:E0755526	18	794	cerebellin
6	HOG:E0775188.1b	9	1	Complement C1q tumor necrosis factor-related protein 4-like
7	HOG:E0755526.2a.3b	9	1	cerebellin
8	HOG:E0755526.2a.3a	9	1	cerebellin
9	HOG:E0755526.2a.2b	9	1	cerebellin
10	HOG:E0755526.2a.2a	9	1	cerebellin
11	HOG:E0755526.2a.1c.7b	9	1	cerebellin
12	HOG:E0755526.2a.1c.7a	9	1	cerebellin
13	HOG:E0755526.2a.1c.6b	9	1	cerebellin
14	HOG:E0755526.2a.1c.6a	9	1	cerebellin
15	HOG:E0755526.2a.1c.5b	9	1	cerebellin
16	HOG:E0755526.2a.1c.5a	9	1	cerebellin
17	HOG:E0755526.2a.1c.4b	9	1	cerebellin
18	HOG:E0755526.2a.1c.4a	9	1	cerebellin
19	HOG:E0755526.2a.1a.2b	9	1	cerebellin
20	HOG:E0755526.2a.1a.1b	9	1	cerebellin
21	HOG:E0710229.4d	9	3	C1q domain-containing protein
22	HOG:E0775188.1a	8	1	Complement C1q tumor necrosis factor-related protein 4-like
23	HOG:E0775188.2c	7	1	Complement C1q tumor necrosis factor-related protein 4-like
24	HOG:E0766466	6	2	-
25	HOG:E0755526.2a.1a.2a	4	1	cerebellin

Showing 1 to 25 of 40 rows rows per page